Scientists find evidence of virus-eating microorganisms
New York: Scientists have found the first compelling evidence that two groups of ecologically important marine microorganisms could be eating viruses -- catching their "prey" and engulfing them, an advance that may lead to a better understanding of the flow of organic matter in the oceans.
The findings, published in the journal Frontiers in Microbiology, go against the currently predominant views of the role of both viruses and these groups of single-celled organisms called protists in the marine food webs.
"Our data show that many protist cells contain DNA of a wide variety of non-infectious viruses but not bacteria, strong evidence that they are feeding on viruses rather than on bacteria," said study corresponding author Ramunas Stepanauskas, Director of the Single Cell Genomics Center at Bigelow Laboratory for Ocean Sciences in the US.
The scientists explained that the predominant model of the role of viruses in the marine ecosystem is that of the "viral shunt," where microbes infected with viruses lose a substantial fraction of their chemicals back to the pool of dissolved organic matter.
However, the current study noted that the viral shunt could be complemented by a link in the marine microbial food web which may constitute a "sink of viral particles in the ocean."
According to the researchers, this finding "has implications for the flow of carbon through the microbial food web."
In the study, Stepanauskas and his colleagues sampled surface seawater from the Northwestern Atlantic in the Gulf of Maine in the US in July 2009, and the Mediterranean off Catalonia, Spain in January and July 2016.
They used modern single-cell genomics tools to sequence the total DNA from 1,698 individual protists in the water, and found evidence of protists with or without associated DNA.
The researchers explained that the associated DNA could be from symbiotic organisms, ingested prey, or viruses or bacteria sticking to the protists' exterior.
While the technique is very sensitive, the scientists said it doesn't directly show the type of relationship between a protist and its associates.
The scientists found a range of protists including groups called alveolates, stramenopiles, chlorophytes, cercozoans, picozoans, and choanozoans.
They said 19 per cent of the genome from the single cell organisms taken from the Gulf of Maine and 48 per cent of those from the Mediterranean were associated with bacterial DNA, suggesting that these protists had eaten bacteria.
But they added that viral sequences were more common, making up 51 per cent of the protists' genome from the Gulf of Maine and 35 per cent of those from the Mediterranean, with a frequency of one to 52 virus types per protist.
According to the researchers, most of these were from viruses known to infect bacteria -- presumably representing parasites of the protists' bacterial prey.
But they said choanozoans and picozoans, which only occurred in the Gulf of Maine sample, were different since these groups, neither of which have chloroplasts, are poorly known.
The scientists noted that the choanozoans are of great evolutionary interest as the closest living relatives of animals and fungi.
The tiny single-celled organisms were first discovered twenty years ago, and until now, their food sources were a puzzle, as their feeding apparatus is too small for bacteria, but ample for viruses, the researchers said.
In the current research, they found that every single one of the choanozoan and picozoan genomes were associated with viral sequences from bacteria-eating viruses called phages, but mostly without any bacterial DNA.
The same genome sequences were found across a great diversity of species, the study noted.
"It is very unlikely that these viruses are capable of infecting all the protists in which they were found," said Julia Brown, a co-author of the study at the Bigelow Laboratory for Ocean Sciences.
Based on these findings, the scientists concluded that choanozoans and picozoans "probably routinely eat viruses."
"Viruses are rich in phosphorus and nitrogen, and could potentially be a good supplement to a carbon-rich diet that might include cellular prey or carbon-rich marine colloids," Brown said.
The scientists believe the removal of viruses from the water may reduce the number of viruses available to infect other organisms, while also shuttling the organic carbon within virus particles higher up the food chain.
"Future research might consider whether protists that consume viruses accumulate DNA sequences from their viral prey within their own genomes, or consider how they might protect themselves from infection," Brown said.
Let the Truth be known. If you read VB and like VB, please be a VB Supporter and Help us deliver the Truth to one and all.
SWR announces special trains for passengers stranded by large-scale IndiGo cancellations
Bengaluru (PTI): The South Western Railway on Saturday announced a series of special trains, in coordination with Central, South Eastern and Southern Railways, to clear stranded passengers following large-scale IndiGo flight cancellations across the country.
The special services will operate between December 6 and 10 on high-demand routes, including Bengaluru–Chennai, Bengaluru–Pune, Yesvantpur–Hazrat Nizamuddin, Shalimar–Yelahanka and Ernakulam–Yelahanka, officials said.
According to an official statement, SWR will run Train No. 06255/06256 between Chennai Egmore and KSR Bengaluru, 06257/06258 between Bengaluru and MGR Chennai Central, 06259/06260 between Yesvantpur and Hazrat Nizamuddin, and 06263/06264 between Bengaluru and Pune.
ALSO READ: Indigo flights chaos: SCR to run special trains to clear passenger rush
Central Railway will operate Train No. 01413/01414 between Pune and Bengaluru, while South Eastern Railway will run Train No. 08073/08074 between Shalimar and Yelahanka. Southern Railway will operate Train No. 06147/06148 between Ernakulam and Yelahanka, the statement said.
Railways has advised passengers to check updated timings on its official channels and arrive early at stations.
For at least five days in a row, IndiGo flight operations have been significantly disrupted, with a large number of cancellations and delays causing hardships to thousands of passengers. In many cases, baggage has been misplaced.
