Scientists find evidence of virus-eating microorganisms
New York: Scientists have found the first compelling evidence that two groups of ecologically important marine microorganisms could be eating viruses -- catching their "prey" and engulfing them, an advance that may lead to a better understanding of the flow of organic matter in the oceans.
The findings, published in the journal Frontiers in Microbiology, go against the currently predominant views of the role of both viruses and these groups of single-celled organisms called protists in the marine food webs.
"Our data show that many protist cells contain DNA of a wide variety of non-infectious viruses but not bacteria, strong evidence that they are feeding on viruses rather than on bacteria," said study corresponding author Ramunas Stepanauskas, Director of the Single Cell Genomics Center at Bigelow Laboratory for Ocean Sciences in the US.
The scientists explained that the predominant model of the role of viruses in the marine ecosystem is that of the "viral shunt," where microbes infected with viruses lose a substantial fraction of their chemicals back to the pool of dissolved organic matter.
However, the current study noted that the viral shunt could be complemented by a link in the marine microbial food web which may constitute a "sink of viral particles in the ocean."
According to the researchers, this finding "has implications for the flow of carbon through the microbial food web."
In the study, Stepanauskas and his colleagues sampled surface seawater from the Northwestern Atlantic in the Gulf of Maine in the US in July 2009, and the Mediterranean off Catalonia, Spain in January and July 2016.
They used modern single-cell genomics tools to sequence the total DNA from 1,698 individual protists in the water, and found evidence of protists with or without associated DNA.
The researchers explained that the associated DNA could be from symbiotic organisms, ingested prey, or viruses or bacteria sticking to the protists' exterior.
While the technique is very sensitive, the scientists said it doesn't directly show the type of relationship between a protist and its associates.
The scientists found a range of protists including groups called alveolates, stramenopiles, chlorophytes, cercozoans, picozoans, and choanozoans.
They said 19 per cent of the genome from the single cell organisms taken from the Gulf of Maine and 48 per cent of those from the Mediterranean were associated with bacterial DNA, suggesting that these protists had eaten bacteria.
But they added that viral sequences were more common, making up 51 per cent of the protists' genome from the Gulf of Maine and 35 per cent of those from the Mediterranean, with a frequency of one to 52 virus types per protist.
According to the researchers, most of these were from viruses known to infect bacteria -- presumably representing parasites of the protists' bacterial prey.
But they said choanozoans and picozoans, which only occurred in the Gulf of Maine sample, were different since these groups, neither of which have chloroplasts, are poorly known.
The scientists noted that the choanozoans are of great evolutionary interest as the closest living relatives of animals and fungi.
The tiny single-celled organisms were first discovered twenty years ago, and until now, their food sources were a puzzle, as their feeding apparatus is too small for bacteria, but ample for viruses, the researchers said.
In the current research, they found that every single one of the choanozoan and picozoan genomes were associated with viral sequences from bacteria-eating viruses called phages, but mostly without any bacterial DNA.
The same genome sequences were found across a great diversity of species, the study noted.
"It is very unlikely that these viruses are capable of infecting all the protists in which they were found," said Julia Brown, a co-author of the study at the Bigelow Laboratory for Ocean Sciences.
Based on these findings, the scientists concluded that choanozoans and picozoans "probably routinely eat viruses."
"Viruses are rich in phosphorus and nitrogen, and could potentially be a good supplement to a carbon-rich diet that might include cellular prey or carbon-rich marine colloids," Brown said.
The scientists believe the removal of viruses from the water may reduce the number of viruses available to infect other organisms, while also shuttling the organic carbon within virus particles higher up the food chain.
"Future research might consider whether protists that consume viruses accumulate DNA sequences from their viral prey within their own genomes, or consider how they might protect themselves from infection," Brown said.
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MP HC sets up judicial commission to probe water contamination in Indore
Indore (PTI): The Indore bench of Madhya Pradesh High Court on Tuesday set up a commission of inquiry comprising a former HC judge to probe the issue of water contamination in city's Bhagirathpura, saying the matter requires probe by an independent, credible authority and "urgent judicial scrutiny".
It also directed the commission to submit an interim report after four weeks from the date of commencement of proceedings.
A division bench of Justices Vijay Kumar Shukla and Alok Awasthi constituted the commission while hearing several public interest litigations (PILs) filed simultaneously regarding the deaths of several people in Bhagirathpura due to the consumption of contaminated water.
The HC reserved the order after hearing all the parties during the day, and released it late at night.
The state government on Tuesday told the HC that the deaths of 16 people in Indore's Bhagirathpura area was possibly linked to a month-long outbreak of vomiting and diarrhoea caused by contaminated drinking water.
The government presented an audit report of 23 deaths from the current gastroenteritis epidemic in Bhagirathpura before the bench, suggesting that 16 of these fatalities may have been linked to the outbreak of vomiting and diarrhoea caused by contaminated drinking water.
The report, prepared by a committee of five experts from the city's Government Mahatma Gandhi Memorial Medical College, stated that the deaths of four people in Bhagirathpura were unrelated to the outbreak, while no conclusion could be reached regarding the cause of death of three other people in the area.
During the hearing, the high court sought to know from the state government the scientific basis behind its report.
The division bench also expressed surprise at the state government's use of the term "verbal autopsy" in relation to the report, sarcastically stating that it had heard the term for the first time.
The HC expressed concern over the Bhagirathpura case, stating that the situation was "alarming," and noted that cases of people falling ill due to contaminated drinking water have also been reported in Mhow, near Indore.
In its order, the HC said the serious issue concerning contamination of the drinking water supply in Bhagirathpura area allegedly resulted in widespread health hazards to residents, including children and elderly persons.
According to the petitioners and media reports, death toll is about 30 till today, but the report depicts only 16 without any basis or record, it said.
It is averred that sewage mixing, leakage in the pipeline, and failure of civic authorities to maintain potable water standards have led to the outbreak of water-borne diseases. Photographs, medical reports, and complaints submitted to the authorities prima facie indicate a matter requiring urgent judicial scrutiny, the HC said.
"Considering the gravity of the allegation and affecting the right to life under Article 21 of the Constitution of India and the need for an independent fact-finding exercise, the Court is of the opinion that the matter requires investigation by an independent, credible authority," it said.
"Accordingly, we appoint Justice Sushil Kumar Gupta, former judge of the Madhya Pradesh High Court, a one-man commission of inquiry into the issues relating to water contamination in Bhagirathpura, Indore, and its impact on other areas of the city," the HC added.
As per the order, the commission shall inquire into and submit a report on the cause of contamination -- whether the drinking water supplied to Bhagirathpura was contaminated; and the source and nature of contamination (sewage ingress, industrial discharge, pipeline damage etc).
The panel will also probe the number of actual deaths of affected residents on account of contaminated water; find out the nature of disease reported and adequacy of medical response and preventive measures; suggest immediate steps required to ensure safe drinking water as well as long-term infrastructural and monitoring reforms.
It will also identify and fix responsibility upon the officers and officials found prima facie responsible for the Bhagirathpura water contamination incident, and suggest guidelines for compensation to affected residents, particularly vulnerable sections.
The commission shall have powers of a civil court for the purpose of summoning officials and witnesses; calling up records from the government department, hospitals, laboratories and civic bodies; ordering water quality testing through accredited laboratories; conducting spot inspections.
All state authorities involving district administration, Indore Municipal Corporation, public health engineering department and Madhya Pradesh Pollution Control Board shall extend full co-operation and provide records as sought by the commission, it said.
The state government shall provide office space, staff, and logistical support to the commission, it said.
During the hearing in the day, the state government also presented a status report to the court in this matter.
According to reports, a total of 454 patients were admitted to local hospitals during the vomiting and diarrhea outbreak, of whom 441 have been discharged after treatment, and 11 are currently hospitalised.
According to officials, due to a leak in the municipal drinking water pipeline in Bhagirathpura, sewage from a toilet was also mixed in the water.
